Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MISSYHRPTRALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKYIES-IVDGFCVSNLDEAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVASLEWLRLCQTSAVDLSGLE-VHIKVDSGMGRIGVRQLDEGNKLISELGE-SGASVKGIFTHFATADEADNCKFNQQLTFFKDFISGLDNCP---DLVHASNSATSLWHSETIFNAVRLGVVMYGLNPSGTDLDLPYPINPALSLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGFSVIVNGELCEIIGRVSMDQMTIRLPQKYTI--GTKVTLIGQQGSCNITTTDVAQKRQTINYEVLCLLSDRIPRYY |
4LUS Chain:B ((7-370)) | -------PTWAEINLDNLRFNLNNIKNLLEEDIKICGVIKADAYGHGAVEVAKLLEKEKVDYLAVARTAEGIELRQNGITLPILNLGYTPDEAFEDSIKNKITMTVYSLETAQKINEIAKSLGEKACVHVKIDS-----GFQPNEESVQEIIELNKLEYIDLEGMFTHFATADE---EYTYKQANNYKFMSDKLDEAGVKIAIKHVSNSAAIMDCPDLRLNMVRAGIILYGHYPSDDVFKDRLELRPAMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIATVPIGYADGFTRIQKNPKVLIKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFGE---GEVTAERIAKDLGTINYEVLCMISRRVDRVY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LUS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -251258 for 2877 contacts (-87.3/contact) +
2D Compatibility (PS) -36829 + (NN) -5408 + (LL) 668
1D Compatibility (HY) -24400 + (ID) 6850
Total energy: -324077.0 ( -112.64 by residue)
QMean score : 0.495
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