Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKERELRRTMAVFPIGTVMKLTDLTARQIRYYEDQGLITPERTEGNRRMFSLNDMDRLLEIKDFISDGLHISDIKNEYMQRQHKSKEKQKSLSDAEVRRLLQDELRNQGRFSSPSQHIGNMHL
2ZHG Chain:A ((10-77))
----------ALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSR
General information:
TITO was launched using:
RESULT:
Template:
2ZHG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37702 for 454 contacts (-83.0/contact) +
2D Compatibility (PS) -7349 + (NN) -1977 + (LL) 1216
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -50312.0 ( -110.82 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_2ZHG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZHG-query.scw
PDB file :
Tito_Scwrl_2ZHG.pdb
: