Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIALFAGGDLTYFE------YDFDYFVGIDRGSLFLLKNGLSLDMAVGDFDSITEDELLYIKHYCSNIVSASAEKNDTDTELALKTIFKEFPEAQVTVFGAFGGRIDHMMSNIFLPSDTDLEPFMSQIRLKDEQNIVTYLPSGKNQVSR-IEGMSYVSFMPE-S-ESTLQISGAKYELNKSNYFKK-KMYSSNEFMTSPIEVELKDGYLIIIYSKDRG
3LM8 Chain:A ((2-214))
-KTINIVAGGPKNLIPDLTGYTDEHTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQP-DIIQIFGITGGRADHFLGNIQLLYKGVKTNI--KIRLIDKQNHIQMFPPGEYD-IEKDENKRYISFIPFSEDIHELTLTGFKYPLNNCHITLGSTLCISNELIHSRGTFSFVKGILIMIRSTDL-
General information:
TITO was launched using:
RESULT:
Template:
3LM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95915 for 1564 contacts (-61.3/contact) +
2D Compatibility (PS) -21843 + (NN) -6928 + (LL) 784
1D Compatibility (HY) -12000 + (ID) 3450
Total energy: -139352.0 ( -89.10 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_3LM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LM8-query.scw
PDB file :
Tito_Scwrl_3LM8.pdb
: