Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKRIWYLIIIITVILGGLAMKNLFATTEASSRKQEQDRVVKYIKQHVELTNGDQIKKVEFIDFQKNEMTGTWGISTKINEQFSISFSEDRIGGKLRALGYQPNEIGFSKDINSNNQNVNDIEVIYMKEE |
2K3D Chain:A ((13-68)) | -------------------------------FFNEQKEKVTLYLKHN-----IPDFNTVTFTNEEFNPI-GI-SIDGYINNDKNLSFTAGKDVKIFSSSEELDKMFQEPRKGYDEILEHHHHHH------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2K3D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 6255 for 320 contacts (19.5/contact) +
2D Compatibility (PS) -5910 + (NN) -1098 + (LL) 4588
1D Compatibility (HY) -2400 + (ID) 600
Total energy: 835.0 ( 2.61 by residue)
QMean score : 0.441
|
|
|