Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDDHPYHVAITATAARDLQRLPEK--IAAACVEFVFGPLL-NNPHRL---GKPLRNDLEGLHSARR-GDYRVVYAIDDGHHRVEIIHIARRSASYRMNPCRPR
4LTT Chain:A ((1-91))
-----MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVIL-TLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDD--ELILLRLGSHSELFLEG-----
General information:
TITO was launched using:
RESULT:
Template:
4LTT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44699 for 542 contacts (-82.5/contact) +
2D Compatibility (PS) -9019 + (NN) -1210 + (LL) -36
1D Compatibility (HY) -7200 + (ID) 550
Total energy: -62714.0 ( -115.71 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4LTT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LTT-query.scw
PDB file :
Tito_Scwrl_4LTT.pdb
: