Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTDVARLLALRSFTELGARQRARALLDAGSFRELLDPFAGVQSPWLERQGI-VPQADDGVVVARGLLDGQPAVLAAIEGAFQGGSLGEVSGAKIAGALELAAEDNRNGVPTRALLLLETGGVRLQEANLGLAAIAEIQAAIVDLQRYQPVVAVIAGPVGCFGGMSIAAGLCSYVL-VTREARLGLNGPQVIEQEAGIAEYDSRDRPFIWSLTGGEQRFASGLADAYLADDLDEVRTSVLAYFAKGLPARPRCRRAEDYLRRLGDLDTAEQPDAAGVRRLYQGLGQGDAT |
1VRG Chain:A ((46-262)) | --------------KLTAWERLELLLDPGTFVEI-DKFVEHRNTYFGLDKVKLPR--DGVITGVGEINGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLAL---KMGIPV--IGINDSGGARIQEGVDALAGYGEIFLRNTLASGVVPQITVIAGP--CAGGAVYSPALTDFIVMVDQTARMFITGPNVIKAVTG-EEISQED-------LGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYLPSNNAEEPPVEDPDTSLETPEDILDILPDNPNKGYDVRDVIKR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VRG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93009 for 1856 contacts (-50.1/contact) +
2D Compatibility (PS) -24189 + (NN) -13536 + (LL) 2808
1D Compatibility (HY) -10400 + (ID) 3400
Total energy: -141726.0 ( -76.36 by residue)
QMean score : 0.450
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