Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSMRLKLLRKKLGVTLETLAEKTGLTKSYLSKVERGLNTPSIAAALKLAKALNVQVEELFSEESDGVDGYSIVRRDQRKSLSSGDDGPAYASLAQQIGARALLPFIVHPPRDFSHSTFKEHLGEEFIFVHEGQVEVDFMNQRIILERGDALHFNAQKPHRIRSLGETQAELLVVIHSDE
2LYJ Chain:A ((6-66))
----LKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25469 for 407 contacts (-62.6/contact) +
2D Compatibility (PS) -6660 + (NN) -2789 + (LL) 7896
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -31922.0 ( -78.43 by residue)
QMean score : 0.865
(partial model without unconserved sides chains):
PDB file :
Tito_2LYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LYJ-query.scw
PDB file :
Tito_Scwrl_2LYJ.pdb
: