Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDYIRDGQAIYRQSFATIRAEANLAGIPADLEKLAVRVIHACGMVDVVDDLRFSPGAGAAGRAALAAGAAILCDARMVAEGVTRSRLPA-ANRVICTLNEADVPALATELGNTRSAVALEH-WREH-LEGSVVVIGNAPTALFYLLEMLDAGAPKPALILGFPVGFVGAAESKEMLAADSRGVPYVIVRGRRGGSAMAAAAVNALATERE
1V9C Chain:B ((5-200))
-------GRAIEEESFRIVDQEAGPHGFSPLEWPVVRRMIHATADFEYKALTRFSQGAVEAGLKAIQAGARILVDARMIACGLNPERLRLFGNEVVELLAHPEVVARAKAT--TRAEAAVAYAWEKGLLDGAIVGVGNAPTFLLALVEAIRQGA-RPALVLGMPVGFVNVLEAKRALMEAP--VPWIVTEGRKGGSTLVVAALHAL-----
General information:
TITO was launched using:
RESULT:
Template:
1V9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162337 for 1594 contacts (-101.8/contact) +
2D Compatibility (PS) -21955 + (NN) -12029 + (LL) 696
1D Compatibility (HY) -12400 + (ID) 4000
Total energy: -212025.0 ( -133.01 by residue)
QMean score : 0.744
(partial model without unconserved sides chains):
PDB file :
Tito_1V9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V9C-query.scw
PDB file :
Tito_Scwrl_1V9C.pdb
: