Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYEKVE
1YIV Chain:A ((6-131))
--------GTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDVITIRTESGFKNTEISFKLGQEFDETTADNRKAKSTVTLAAGALNQVQKWNGNETTIKRKLVDGKMVVECKMASVVCTRIYEKV-
General information:
TITO was launched using:
RESULT:
Template:
1YIV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29136 for 879 contacts (-33.1/contact) +
2D Compatibility (PS) -14380 + (NN) -3605 + (LL) 1220
1D Compatibility (HY) -12800 + (ID) 3600
Total energy: -62301.0 ( -70.88 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_1YIV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YIV-query.scw
PDB file :
Tito_Scwrl_1YIV.pdb
: