Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKEA
2Q9S Chain:A ((25-154))
-CDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDLVTIRSESTFKNTEISFKLGVEFDEITADDRKVKSIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVECVMKGVTSTRVYER--
General information:
TITO was launched using:
RESULT:
Template:
2Q9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32626 for 927 contacts (-35.2/contact) +
2D Compatibility (PS) -14341 + (NN) -2792 + (LL) 456
1D Compatibility (HY) -13600 + (ID) 4150
Total energy: -67053.0 ( -72.33 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_2Q9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q9S-query.scw
PDB file :
Tito_Scwrl_2Q9S.pdb
: