Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVS-EDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKATSL
3GGC Chain:A ((8-217))
----------------VISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNS--DRSIPMTVD-FIRLKSYC--QSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA---
General information:
TITO was launched using:
RESULT:
Template:
3GGC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -208003 for 1592 contacts (-130.7/contact) +
2D Compatibility (PS) -21969 + (NN) -5651 + (LL) 140
1D Compatibility (HY) -24400 + (ID) 5100
Total energy: -264983.0 ( -166.45 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_3GGC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GGC-query.scw
PDB file :
Tito_Scwrl_3GGC.pdb
: