Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAVSSDRNFPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRTT
2VSL Chain:A ((1-96))
----------FPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLT-----------
General information:
TITO was launched using:
RESULT:
Template:
2VSL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24745 for 713 contacts (-34.7/contact) +
2D Compatibility (PS) -10555 + (NN) -7457 + (LL) 1356
1D Compatibility (HY) -12800 + (ID) 4800
Total energy: -59001.0 ( -82.75 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_2VSL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VSL-query.scw
PDB file :
Tito_Scwrl_2VSL.pdb
: