Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADPRPDPDELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGHAGELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQVGQPVLISDHLNLT---ARSPLVGGE-------FVDLTDAYSPRLRELARQS------DPQLAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTN--LAAGITGEPLSHAEVLAAGAASATRMGALLADVIARF |
| 1VFN Chain:A ((3-277)) | -------TYEDYQDTAKWLLSHTE-QRPQVAVICGSGLGGLVNKLTQ-AQTFDYSEIPNFPE-------GRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMD--SQGKANHEEVLEAGKQAAQKLEQFVSLLMA-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VFN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -163584 for 2008 contacts (-81.5/contact) +
2D Compatibility (PS) -26677 + (NN) -3706 + (LL) 564
1D Compatibility (HY) -20400 + (ID) 4750
Total energy: -218553.0 ( -108.84 by residue)
QMean score : 0.564
|
|
|