Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGPGSEAGP
1VID Chain:A ((4-216))
-----------------------------------------------------TKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPS-----
General information:
TITO was launched using:
RESULT:
Template:
1VID.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142110 for 1804 contacts (-78.8/contact) +
2D Compatibility (PS) -23165 + (NN) -9159 + (LL) 4820
1D Compatibility (HY) -30000 + (ID) 8600
Total energy: -208214.0 ( -115.42 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_1VID.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VID-query.scw
PDB file :
Tito_Scwrl_1VID.pdb
: