Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGSLQPDAGNASWNGTEAPGGGARATPYSLQVTLTLVCLAGLLMLL----TVFGNVLVIIAVFTSRALKAPQNLFLVSLASADILVATLVIPFSLANEVM-GYWYFGKAWCEIYLALDVLFCTSSIVHLCAISLDRYWSI---TQAIEYNLKRTPRRIKAIIITVWVISAVISFP-PLISIEKKGGGGGPQPAEPRCEINDQKW--YVISSCIGSFFAPCLIMILVY-VRIYQIAKRRTRVPPSRRGPD---AVAAPPGGTERRPNGLGPERSAGPGGAEAEPLPTQLNGAPGEPAPAGPRDTDALDLEESSSSDHAERPPGPRRPERGPRGKGKARASQVKPGDSLPRRGPGATGIGTPAAGPGEERVGAAKASRWRGRQNREKRFTFVLAVVIGVFVVCWFPFFFTYTLTAVGC-----SVPRTLFKFFFWFGYCNSSLNPVIYTIFNHDFRRAF-KKILCRGDRKRIV |
4NC3 Chain:A ((32-414)) | ---------------------------------------AALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQANQYN-SRATAFIK--ITVVWLISIGIAIPVPIKGIET-VDN----PNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHALQKKAADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRA------------------------KDFR--HGFDILVGQIDD------ALKLANEGKVKEAQAAAEQLKTTRN-------------------------AYIQKYLQTISNEQRASKVLGIVFFLFLLMWCPFFIT-NITLVLCDSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITCNYR----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155460 for 2413 contacts (-64.4/contact) +
2D Compatibility (PS) -33663 + (NN) 6386 + (LL) 1568
1D Compatibility (HY) -40800 + (ID) 5950
Total energy: -227919.0 ( -94.45 by residue)
QMean score : 0.149
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