Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDHQDPYSVQATAAIAAAITFLILFTIFGNALVILAVLTSRSLRAPQNLFLVSLAAADILVATLIIPFSLANELLGYWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVSRALEYNSKRTPRRIKCIILTVWLIAAVISLPPLI---YKGDQGPQPRGRPQCKLNQEAWYILASSIGSFFAPCLIMILVYLRIYLIAKRSN-------RRGPRAK----------GGPGQGESKQPRPDHGGALASAKLPALASVASAREVNGHSKSTGEKEEGETPEDTGTRA------LPPSW--------AALPNS-GQGQKEGVCGASPEDEAEEEEEEEEECEPQAVPVSPASACSPPLQQP-QGSRVLATLRGQVLLGRGVGAIGGQWWRRRAQLTREKRFTFVLAVVIGVFVLCWFPFFFSYSLGAICPKHCKVPHGLFQFFFWIGYCNSSLNPVIYTIFNQDFRRAFRRILCRPWTQTAW |
4DAJ Chain:A ((9-440)) | --------IWQVVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEKMNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSP------SLNAAK--SELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEA----AVNLAKSRWYN---QTPNRAKRVITTFR------------TGTW---DAYLIKE---AQTLSAILLAFIITWTPYNIMVLVNTFCDS-C-IPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKT----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DAJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172223 for 2901 contacts (-59.4/contact) +
2D Compatibility (PS) -40500 + (NN) -10006 + (LL) 2252
1D Compatibility (HY) -34400 + (ID) 5900
Total energy: -260777.0 ( -89.89 by residue)
QMean score : 0.231
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