Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMWGAGSPLAWLSAGSGNVNVSSVGPAEGPTGPAAPLPSPKAWDVVLCISGTLVSCENALVVAIIVGTPAFRAPMFLLVGSLAVADLLAGLGLVLHFAAVFCIG--SAEMSLVLVGVLAMAFT-ASIGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWGGALGLGLLPVLAWN-------CLDGLTTCGVVYPLSKNHLVVLAIAFFMVFG-------IMLQLYAQICRIVCRHAQQIALQRHLLPASHYVAT-RKGI---ATLAVVLGAFAACWLP------FTVYCLLGDAHSPPLYTYLTLLPATYNSMINPIIYAFRNQDVQKVLWAVCCCCSSSKIPFRSRSPSDV |
| 3VGA Chain:A ((44-302)) | -----------------------------------------------------------------------------FVVSLAAADIAVGV-LAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVACLFEDVVPMNYMV-----YFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQP--LPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFC-PDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -180176 for 1468 contacts (-122.7/contact) +
2D Compatibility (PS) -23053 + (NN) -8004 + (LL) 5360
1D Compatibility (HY) -22800 + (ID) 3900
Total energy: -232573.0 ( -158.43 by residue)
QMean score : 0.239
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