Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNECHYDKHMDFFYNRSNTDTVDDWTGTKLVIVLCVGTFFCLFIFFSNSLVIAAVIKNRKFHFPFYYLLANLAAADFFAGIAYVFLMFNTGPVSKTLTVNRWFLRQGLLDSS-----LTAS-LTNLLVIAVERHMSI-MRMRVHSNLTKKRVTLLILLVWAIAIFMGAVPTLGWN--------------CLCNISAC--SSLAPIYSRSYLVFWTVSNLMAFLIMVVVYLRIYVYVKRKTNVLSPHTSGSISRRRTPMKLM---KTVMTVLGAFVVCWTPGLVVLLLDGLNCRQCGVQHVKRWFLLLALL----NSVVNPIIYSYKDEDMYGTMKKMICCFSQENPERRPSRIPSTVLSRSDTGSQYIEDSISQGAVCNKSTS |
| 2YDV Chain:A ((23-303)) | ----------------------------------------------GNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAI-------PFAIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACV-LVPLLLMLGVYLRIFLAARRQLKQMESQ--------STLQKEVHAAKSLAIIVGLFALCWLP-LHIINCFTFFCPDC--SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAENLYFQ----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201339 for 1739 contacts (-115.8/contact) +
2D Compatibility (PS) -25016 + (NN) -10655 + (LL) 4612
1D Compatibility (HY) -25600 + (ID) 3900
Total energy: -261898.0 ( -150.60 by residue)
QMean score : 0.277
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