Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVSLNHPASNTTSTKNNNSAFFYFESCQPPSPALLLLCIAYTVVLIVGLFGNLSLIIIIFKKQRKAQNFTSILIANLSLSDTLVCVMCIHFTIIYTLMDHWIFGDTMCRLTSYVQSVSISVSIFSLVFTAVERYQLIVNP-RGWKPSVTHAYWGITLIWLFSLLLSIPFFLSYHLTDEPFRNLSLPTDLYTHQVACVENWPSKKDRLLFTTSLFLLQYFVPLGFILICYLKIVICLRRRNAKVDKKKENEGRLNENKRINTMLISIVVTFGACWLPRISSMSSLTGIMRC
4PXF Chain:A ((42-267))
----------------------------------------AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPH--------EETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA---QQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS
General information:
TITO was launched using:
RESULT:
Template:
4PXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183870 for 1619 contacts (-113.6/contact) +
2D Compatibility (PS) -22693 + (NN) -5459 + (LL) 2784
1D Compatibility (HY) -26400 + (ID) 2700
Total energy: -238338.0 ( -147.21 by residue)
QMean score : 0.224
(partial model without unconserved sides chains):
PDB file :
Tito_4PXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PXF-query.scw
PDB file :
Tito_Scwrl_4PXF.pdb
: