Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MENYNQTSTDFILLGLFPPSRIDLFFFILIVFIFLMALIG---NLSMILLIFLDTHLHTPMYFLLSQLSLIDLNYISTIVPKMASDFLHGNKSISFTGCGIQSFFFLALGGAEALL-LASMAYDRYIAICFPLHYLIRMSKRVCVLMITGSWIIGSINACAHTVYVLHIPYCRSRAINHFFCDVPAMVTLAC-MDTWV-YEGTVFLSATIFL-----VFPFIGISCSYGQVLF-----AVYHMKSAEGRKK-------------AYLTCSTHLTVVTFYYAPFVYTYLRPRSLRSPTEDKVLAVFYTILTPMLNPIIYSLRNKEVMGALTRVSQRICSVKM |
| 4J4Q Chain:A ((37-312)) | -------------------------FSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFF-ATLGGEIALWSLVVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMAL--ACAAPPLVGWSRY------------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIP-------AFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J4Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -209927 for 1824 contacts (-115.1/contact) +
2D Compatibility (PS) -24796 + (NN) 516 + (LL) 3544
1D Compatibility (HY) -21600 + (ID) 3600
Total energy: -255863.0 ( -140.28 by residue)
QMean score : 0.207
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