Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKANETSPVMGFVLLRLSAHPELEKTFFVLILLMYLVILLGNGVLILVTILDSRLHTPMYFFLGNLSFLDICFTTSSVPLVLDSFLTPQETISFSA--CAVQMALSFAMAGTECLLLSMMAFDRYVAICNPLRYSVIMSKAAYMPMAASSWAIGGAASVVHTSLAIQLPFCGDNVINHFTCEILAVLKLACADISINVISMEVTNVIFLGVPVLFISF----SYVFIITTILRIPSAEGRKKV-FSTCSAHLTVVIVFYGTLFFMYGKPKSKDSMGADKEDL-SDKLIPLF--YGVVTPMLNPIIYSLRNKDVKAAVRRLLRPKGFTQ |
| 2YCY Chain:A ((10-297)) | -----------------------WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPF--GATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSF----LPIMMHWWRDEDPQALKC----YQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIR--DRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -214318 for 1999 contacts (-107.2/contact) +
2D Compatibility (PS) -27436 + (NN) -2026 + (LL) 3452
1D Compatibility (HY) -22800 + (ID) 3600
Total energy: -266728.0 ( -133.43 by residue)
QMean score : 0.217
|
|
|