Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQNQSFVTEFVLLGLSQNPNVQEIVFVVFLFVYIATVGGNMLIVVTILSSPALLVSPMYFFLGFLSFLDACFSSVITPKMIVDSLYVTKTISFEGCMMQLFAEHFFAGVEVIVLTA-------MAYDRYVAICKPLHYSSIMNRRLCGILMGVAWTGGLLHSMI------------QILFTFQLPFCGPNVINHF------MCDLY-PLLELACTDTHIFGLMVVINSGFICIINFSLLLVSYAVILLSLRTHSSEGRWKALSTCGSHIAVVILFFVPCIFVYTRPPSAFSLDKMAAIFYIILNPL------LNPLIYTFRNKEVKQAMRRIWNRLMVVSDEKENIKL |
| 2VT4 Chain:A ((26-296)) | ------------------------------------VAGNVLVIAAI-GSTQRLQTLTNLFITSLACADLVVGLLVVP---FGATLVVRGTWLWGS----FLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM------IFVALRVYREAKEQIR-----------------EH------KALKTLGIIMGVFTLCWLP--FFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177821 for 1495 contacts (-118.9/contact) +
2D Compatibility (PS) -22079 + (NN) 210 + (LL) 9088
1D Compatibility (HY) -23200 + (ID) 3350
Total energy: -217152.0 ( -145.25 by residue)
QMean score : 0.109
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