Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDQRNYTRVKEFTFLGITQSRELSQVLFTFLFLVYMTTLMGNFLIMVTVTCESHLHTPMYFLLRNLSILDI--CFSSITAPKVLIDLLSETKTISFSGCVTQMFFFHLLGGADVFSLSVMAFDRYIAISKPLHYMTIMSRGRCTGLIVASWVGGFVHSIAQISLLLPLPFCGPNVLDTFYCDVPQVLKLACT-DTFTLELLMISNNGLVSWFVFFFLL-----------ISYTVILMMLRSHTGEGRRKAISTCTSHITVVTLHFVPCIYVYARP----FTALPTDTA-----ISVTFTVISPLLNPIIYTLRNQEMKLAMRKL----KRRLGQSERILIQ |
| 3CAP Chain:A ((39-326)) | -------------------------MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT--TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTWV---------MALACAAP---PLVGWSRY--IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN----------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3CAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -204002 for 1893 contacts (-107.8/contact) +
2D Compatibility (PS) -25974 + (NN) -50 + (LL) 3680
1D Compatibility (HY) -20800 + (ID) 3450
Total energy: -250596.0 ( -132.38 by residue)
QMean score : 0.193
|
|
|