Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGAKNNVTEFVLFGLFESREMQHTCFVVFFLFHVLTVLGNLLVIITINARKTLKSPMYFFLSQLSFADICYPSTTIPKMIADTFVEHKIISFNGCMTQLFSAHF---FGGTEIFLLTAMAYDRYVAICRPLHYTAIMDCRKCGLLAGASWLAGFLHSILQTL-------LTVQLPFCGPNEIDNFFCDVHPLLKLACADTYMVGLIVVANSGMISLASFFILIISYVIILLNLRSQSSE--------DR-----RKAVSTCGSHVITV---LLVLMP----PMFMYIRPSTTLAADKLIILFNIVMP---PLLNPLIYTLRNNDVKNAMRKLFRVKRSLGEK |
| 3VGA Chain:A ((18-304)) | ---------------------------------VLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP--FAITISTGFCAACHGC---LFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ----SQGCGEGQVACLFEDVVPM-------NYMVYF----NFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYL-AIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -184157 for 1749 contacts (-105.3/contact) +
2D Compatibility (PS) -24800 + (NN) -5576 + (LL) 6160
1D Compatibility (HY) -28000 + (ID) 3900
Total energy: -240273.0 ( -137.38 by residue)
QMean score : 0.205
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