Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTEFIFLVLSPNQEVQRVCFVIFLFLYTAIVLGNFLIVLTVMTSRSLGSPMYFFLSYLSFMEICYSSATAPKLISDLLAERKVISWWGCMAQLFFLHFFGGTEIFLLTVMAYDHYVAICKPLSYTTIMNWQVCTVLVGIAWVGGFMHSFAQIL----------LIFHLLFCGPNVINHYFCDLVPLLKLACSDTF---LIGLLIVANGGTLSVISFGVLLASYMVILLHLRTWSSEGWCKALST------CGSHFAVVILFFGPC--------VFNSLRPSTT-LPIDKM-VAVFYTVITAILNPVIYSLRNAEMRKAMKRLWIRTLRLNEK |
| 2YDV Chain:A ((21-311)) | ------------------------------ILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLM----------LGVYLRIFLAARRQLKQMESQ------STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKI-IRSHVLRQQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -243779 for 1817 contacts (-134.2/contact) +
2D Compatibility (PS) -26244 + (NN) -17240 + (LL) 4616
1D Compatibility (HY) -24800 + (ID) 3250
Total energy: -310697.0 ( -170.99 by residue)
QMean score : 0.400
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