Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSGENNSSVTEFILAGLSEQPELQLPLFLLFLGIYVVTVVGNLGMTTLIWLSSHLHTPMYYFLSSLSFIDFCHSTVITPKMLVNFVTEKNIISYPECMTQLYFFLVFAIAECHMLAAMAYDRYMAICSPLLYSVIISNKACFSLILGVYI----IGLV-------CASVHTGCMFRVQFCKFDLINHYFCDLLPLLKLSCSSIYVNKLLILCVGAFNILVPSLTILCSYIFI-IASILHIRSTEGRSKAFSTCSSHMLA---VVIFFGSAAFMYLQPSSIS-------SMDQGKVSSVFYTIIV----PMLNPLIYSLRNKDVHVSLKKMLQRRTLL
2YDV Chain:A ((14-308))-------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEG-KAHSQGCGEGQVACLFEDVVPMNYM----VYFN--FFACV-----LVPLLLMLGVYLRIFLAARRQLKQMESQ----STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR


General information:
TITO was launched using:
RESULT:

Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -269961 for 1913 contacts (-141.1/contact) +
2D Compatibility (PS) -25988 + (NN) 822 + (LL) 3048
1D Compatibility (HY) -26400 + (ID) 3450
Total energy: -321929.0 ( -168.28 by residue)
QMean score : 0.258

(partial model without unconserved sides chains):
PDB file : Tito_2YDV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2YDV-query.scw
PDB file : Tito_Scwrl_2YDV.pdb: