Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSGENNSSVTEFILAGLSEQPELQLPLFLLFLGIYVVTVVGNLGMTTLIWLSSHLHTPMYYFLSSLSFIDFCHSTVITPKMLVNFVTEKNIISYPECMTQLYFFLVFAIAECHMLAAMAYDRYMAICSPLLYSVIISNKACFSLILGVYI----IGLV-------CASVHTGCMFRVQFCKFDLINHYFCDLLPLLKLSCSSIYVNKLLILCVGAFNILVPSLTILCSYIFI-IASILHIRSTEGRSKAFSTCSSHMLA---VVIFFGSAAFMYLQPSSIS-------SMDQGKVSSVFYTIIV----PMLNPLIYSLRNKDVHVSLKKMLQRRTLL |
2YDV Chain:A ((14-308)) | -------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEG-KAHSQGCGEGQVACLFEDVVPMNYM----VYFN--FFACV-----LVPLLLMLGVYLRIFLAARRQLKQMESQ----STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -269961 for 1913 contacts (-141.1/contact) +
2D Compatibility (PS) -25988 + (NN) 822 + (LL) 3048
1D Compatibility (HY) -26400 + (ID) 3450
Total energy: -321929.0 ( -168.28 by residue)
QMean score : 0.258
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