Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MITFLPIIFSILVVVTFVIGNFANGFIALVNSTEWVKRQKISFADQIVTALAVSRVGLLWVLLLNWYSTVLNPAF-CSVELRTTAYNIWAVTGHFSNWPATSLSIFYLLKIANFSNLIFLRLKRRVKSVILVVLLGPLLFLACHLFVVNMNQIVWTKEYEGNMTWKIKL--RR---AMYLSDTTVTMLANLVPFTVTLISFLLLVCSLCKHLKKMQLHGKGSQDPSTKVHIKVLQTVIS----FFLLRAIYFVSVIISVWSFKN---LENKPVFMFCQAIGFSCSSAHPFILIWGNKKLKQTYLSVLWQMRY |
2KS9 Chain:A ((34-323)) | -------LWAAAYTVIVVTSVVGNVVVMWIILAHK---RMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAII---HPLQPRLS---ATATKVVICVIWVLALLLAFPQGYYSTTE--TMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSD--RYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175749 for 2143 contacts (-82.0/contact) +
2D Compatibility (PS) -27523 + (NN) -777 + (LL) 1616
1D Compatibility (HY) -16400 + (ID) 1450
Total energy: -220283.0 ( -102.79 by residue)
QMean score : 0.158
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