Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ASRTAPAAATKCD--PLALRPCAAAILWGE--APSTACCAGLRAQK-RCLCRYAKNPDLRKY-INSQNSRKVAAACSVPAP-RC
2RKN Chain:A ((4-77))
----------LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21657 for 409 contacts (-53.0/contact) +
2D Compatibility (PS) -6704 + (NN) -2219 + (LL) 756
1D Compatibility (HY) -6000 + (ID) 850
Total energy: -36674.0 ( -89.67 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: