Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GVVGVAGAGCN--AGQLTVCTGAIAGGA--RPTAACCSSLRAQQ-GCFCQFAKDPRYGRY-VNSPNARKAVSSCGIALP-TCH
2RKN Chain:A ((4-77))
--------LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC-
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28196 for 409 contacts (-68.9/contact) +
2D Compatibility (PS) -6894 + (NN) -1738 + (LL) 392
1D Compatibility (HY) -5600 + (ID) 950
Total energy: -42986.0 ( -105.10 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: