Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QCDPEQLSACVSPIFYGT--APSESCCSNLRAQQKEGCLCQYAKDPTYASY-VNNTNARKTIAACGIPIP-SC
2RKN Chain:A ((9-77))
---QDELNECKPAVSKENPTSPSQPCCTALQHADF-ACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22218 for 393 contacts (-56.5/contact) +
2D Compatibility (PS) -6726 + (NN) -3496 + (LL) 204
1D Compatibility (HY) -4400 + (ID) 900
Total energy: -37536.0 ( -95.51 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: