Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
KTLILGEEVKATCD--FTKFQVCKPEIITGS--PPSEECCEKLKEQQ-SCLCAYLISPSISQY-IG--NAKRVIRACGIPFP-NCS
2RKN Chain:A ((4-77))
-----------LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC-
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21927 for 388 contacts (-56.5/contact) +
2D Compatibility (PS) -6860 + (NN) -5997 + (LL) 1080
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -39054.0 ( -100.65 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: