Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
RVVKGSGEEVNVTCD--ATQLSSCVTAVSTGA--PPSTDCCGKLKEHE-TCLCTYIQNPLYSSY-VTSPNARKTLAACDVAYP-TC
2RKN Chain:A ((4-77))
------------LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28502 for 409 contacts (-69.7/contact) +
2D Compatibility (PS) -6613 + (NN) -706 + (LL) 688
1D Compatibility (HY) -5600 + (ID) 1150
Total energy: -41883.0 ( -102.40 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: