Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATTDPQPAPSEACCATLGKADL----------RCLCSYKNSPWLSLY-NIDPKRAMELPAKCGLTTPPDC
1AFH Chain:A ((4-81))
-CGQVASAIAPCISYARGQGS---GPSAGCCSGVRSLNNAARTTADRRAACNC-LKNA--AAGVSGLNAGNAASIPSKCGVSIPY--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13904 for 486 contacts (-28.6/contact) +
2D Compatibility (PS) -7018 + (NN) -4668 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -29240.0 ( -60.16 by residue)
QMean score : 0.297
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: