Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSICDMDINDMQKCRPAITGNNPPPPVNDCCVVVRKANF----------ECLCRFKFYLPIL-RIDPSKVVALVAKCGVTTVPRSCQV
1AFH Chain:A ((3-80))
--SCGQVASAIAPCISYARGQGS-GPSAGCCSGVRSLNNAARTTADRRAACNC-LKNAAAGVSGLNAGNAASIPSKCGVSIP------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37151 for 485 contacts (-76.6/contact) +
2D Compatibility (PS) -6730 + (NN) -4673 + (LL) 440
1D Compatibility (HY) 1200 + (ID) 800
Total energy: -47714.0 ( -98.38 by residue)
QMean score : 0.200
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: