Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EGAGECGRSSPDRMALRMAPCISAADEPDSAPSSSCCSAVHTLGK--------SPSCLCAVMLSGTAKMA-GIKPEVAITIPKRCNMADRPVGYKCGDYTLP
1SIY Chain:A ((3-78))
----------CGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSC--L-KAAAGAVRGINPNNAEALPGKCGVNIP------------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37402 for 474 contacts (-78.9/contact) +
2D Compatibility (PS) -6781 + (NN) -3672 + (LL) 396
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -52259.0 ( -110.25 by residue)
QMean score : 0.180
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: