Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APRGAHGAGECGKTPADKMALKLAPCASAGQDPKSAPSSGCCTAVHTIGK---Q----SPKCLCAVMLSDTAKSA-GIKPEVAMSIPKRCNLVDRPVGYKCGAYTLP
1BWO Chain:A ((2-78))
--------------DCGHVDSLVRPCLSYVQGG-PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIA---RGIHNLNEDNARSIPPKCGVNLP------------
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22639 for 442 contacts (-51.2/contact) +
2D Compatibility (PS) -7213 + (NN) -5481 + (LL) 452
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -38481.0 ( -87.06 by residue)
QMean score : 0.197
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: