Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------------ITCGQVDS--DLTSCLGYARKGGVIPP---GCCAGVRTLNNLAK-----------TTPDRQTACNCLKSLVNPSL-----GLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDS-LEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35764 for 457 contacts (-78.3/contact) +
2D Compatibility (PS) -8664 + (NN) -336 + (LL) -500
1D Compatibility (HY) -1200 + (ID) 850
Total energy: -47314.0 ( -103.53 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: