Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------------------------------------------AITCGQVSSAIAPCLSYARGTGSAPSGSC---CSGVRNLKSAAS-----------TAADRRAACNCLKNAARGV-----SGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAA------GSVVDALRAVR--NAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22042 for 409 contacts (-53.9/contact) +
2D Compatibility (PS) -9024 + (NN) -6187 + (LL) -36
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -40939.0 ( -100.10 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: