Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QVTLCGMTKEGFASCKPSVQTGVNPLPPSYSCCSALEK--------ADLS--CLCFFKKNYPKMLTDN-NIDPNLAMQLPAKCNMAGSFSCK
1SIY Chain:A ((2-78))
---TCGQVQGNLAQCIGFLQKG---GVVPPSCCTGVKNILNSSRTTADRRAVCSCL-KAAA----GAVRGINPNNAEALPGKCGVNIP----
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12372 for 431 contacts (-28.7/contact) +
2D Compatibility (PS) -6870 + (NN) -4157 + (LL) 1000
1D Compatibility (HY) -2000 + (ID) 1100
Total energy: -25499.0 ( -59.16 by residue)
QMean score : 0.232
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: