Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GVVGVAGASCN--AGQLTVCAGAIAGGA--RPTAACCSSLRAQQ-GCFCQFAKDPRYGRY-VNSPNARKAVSSCGIALP-TCH
2RKN Chain:A ((4-77))
--------LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC-
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27630 for 409 contacts (-67.6/contact) +
2D Compatibility (PS) -6835 + (NN) -1389 + (LL) 392
1D Compatibility (HY) -5600 + (ID) 950
Total energy: -42012.0 ( -102.72 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: