Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQCLDNL--SNMQVCAPLVL----PGAV----NPAP-----------NSNCCIALQATNKDCICNALRA----------------------ATTFTTTCNLPSLDCGITI
1PSY Chain:A ((16-120))
QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---RCMR--
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31191 for 425 contacts (-73.4/contact) +
2D Compatibility (PS) -6318 + (NN) -2096 + (LL) 264
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -43591.0 ( -102.57 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: