Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QICTSQLN--SLNVCAPFVV----PGAPN----TNP-----------STDCCNALGAVQHDCLCSTLQI----------------------AARLPSQCNLPPITCGN
1PSY Chain:A ((16-116))
QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV-------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32395 for 376 contacts (-86.2/contact) +
2D Compatibility (PS) -5744 + (NN) -371 + (LL) -220
1D Compatibility (HY) -5200 + (ID) 700
Total energy: -44630.0 ( -118.70 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: