Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGRVPVDQVALKLAPCAAATQNPRAAVPPSCCAQVRAIGR---V-----PKCLCAVMLSDTARKA-GVKPAVAMTIPKRCAIANRPVGYKCGPYTLP
1AFH Chain:A ((3-80))
-------SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKN-AAAGVSGLNAGNAASIPSKCGVSIP------------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34786 for 494 contacts (-70.4/contact) +
2D Compatibility (PS) -6946 + (NN) -2429 + (LL) 472
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -47789.0 ( -96.74 by residue)
QMean score : 0.262
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: