Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ALTCDDVTGQLFPCLTYLTLRGKNVRPPPQGCCNGVRRLNKQAQSKADRQKACNCIKGLAGTFTGLNLDLVEGLPRRCNVNIPYKISPSTDCKKVN
1AFH Chain:A ((1-93))
AISCGQVASAIAPCISYARGQGS---GPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51320 for 764 contacts (-67.2/contact) +
2D Compatibility (PS) -9630 + (NN) -2473 + (LL) 212
1D Compatibility (HY) -6800 + (ID) 2150
Total energy: -72161.0 ( -94.45 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: