Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAPAPEPTAEAPGPDCFTNLLSLSDCLTYVEAGSNLTKPEKPCCPELAGLVEST-------PQCLCYLLDKNATSSYGFNIDMNRALNLPTVCKVSTP----PVSLCSG
1AFH Chain:A ((3-90))
--------------SCGQVASAIAPCISYARGQG--SGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVS-GLNAGNAASIPSKCGVSIPYTISTSTDCS-
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24598 for 574 contacts (-42.9/contact) +
2D Compatibility (PS) -7935 + (NN) -1620 + (LL) 460
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -37443.0 ( -65.23 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: