Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACSTDLSPYKPCLPAVMGTTPPSPTKECCIAVKSADI----------LCLCEAVGTTELP-GLNKEAALTLPQRCGAVAF----STRVCGSK
1AFH Chain:A ((3-91))
SCGQVASAIAPCISYARGQGS-GPSAGCCSGVRSLNNAARTTADRRAACNC-LKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSR-
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27128 for 535 contacts (-50.7/contact) +
2D Compatibility (PS) -7777 + (NN) -3676 + (LL) 28
1D Compatibility (HY) 0 + (ID) 1000
Total energy: -39553.0 ( -73.93 by residue)
QMean score : 0.258
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: