Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGCDIDLLLPCLNASRDPRVKPDKRCCDAIRQFLPPRKQKSAIDCLCRLATSKEAVALKINLSAAIAIPQKCGIKFE----QRFYCQGRLVPGS
1AFH Chain:A ((5-92))
-GQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV-----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37694 for 634 contacts (-59.5/contact) +
2D Compatibility (PS) -8749 + (NN) -1025 + (LL) 172
1D Compatibility (HY) 0 + (ID) 900
Total energy: -48196.0 ( -76.02 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: