Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACNAMTLQPCLAASQGKVAPDPACCTAIKNIGLSAD-----GPQCLCTLATGPLAKAN-GVSADAAMAIPKKCGLPVP----KGFMCNNKPVPGS
1SIY Chain:A ((6-89))
--VQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCL--KA-AAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNS------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23299 for 514 contacts (-45.3/contact) +
2D Compatibility (PS) -7702 + (NN) -4367 + (LL) 156
1D Compatibility (HY) -2800 + (ID) 1250
Total energy: -39262.0 ( -76.39 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: