Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SSDVCTVVSPVLESCYIALQSGESFMKSESVCCKSLEILENRIRDSDHQFTRYAVCECFKASDNDKQVLVNENLLEVQVLCGPHVPYPI-----------------TSYSDCLQYADEEIARTAL
2W8D Chain:A ((192-237))
----------------------------------------------------------------------------KFITLSNHFPFGMDEGDTDFPAGDFGDSVVDNYFQSAHYLDQSIEQ---
General information:
TITO was launched using:
RESULT:
Template:
2W8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4940 for 129 contacts (-38.3/contact) +
2D Compatibility (PS) -2977 + (NN) -229 + (LL) 5884
1D Compatibility (HY) -1600 + (ID) 300
Total energy: -4162.0 ( -32.26 by residue)
QMean score : 0.071
(partial model without unconserved sides chains):
PDB file :
Tito_2W8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W8D-query.scw
PDB file :
Tito_Scwrl_2W8D.pdb
: