Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVDCTSQLAPVAPCLDYVQGNGKTPSSDCCKGLSSLVTTSP-------VCLCQLSEGKLNLSALGVTVDMKRALSLPTVCKIKGA----DRSRCAGKLSIP
1T12 Chain:A ((1-89))
AITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTC--LKSA--AGAIS-GINLGKAAGLPSTCGVNIPYKISPSTDCSK-----
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25283 for 534 contacts (-47.3/contact) +
2D Compatibility (PS) -8078 + (NN) -2387 + (LL) 976
1D Compatibility (HY) -6000 + (ID) 1100
Total energy: -41872.0 ( -78.41 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: